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1.
J Mol Model ; 28(7): 197, 2022 Jun 22.
Artigo em Inglês | MEDLINE | ID: mdl-35729282

RESUMO

Among the most popular motivations for environmental scientists is improving materials that could be useful to fight or avoid pollution. This work shows a study of neutral and cationic cobalt clusters from 4 to 9 atoms ([Formula: see text], q = 0,1 and n = 4-9) to model their separate interaction with contaminant nitric and nitrous oxides. This study is within the framework of the density functional theory in the Kohn-Sham scheme by using BPW91 functional and 6-311G and 6-31G* basis sets to calculate global and local reactivity indexes. The effect of spin multiplicity is also determined. Results on the geometries of pure cobalt clusters agree with previously reported structures. Global minimum energy structures showed a marked preference towards the interaction of nitric and nitrous oxide molecules with cobalt clusters through chemisorptive dissociation, with the dissociation of the corresponding nitrogen oxide. Reactivity indexes reveal an even-odd alternate, which is related to electron counts. Moreover, the chemical potential is lowering after interaction with nitrogen oxides. The Fukui function illustrates the reactive zones with a high probability of chemisorption of more nitrogen oxide molecules.

2.
J Mol Model ; 22(8): 191, 2016 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-27460921

RESUMO

The main absorption peaks were obtained for 1-(1-hydroxy-4-methyl-2-phenylazo)-2-naphthol-4-sulfonic acid. Generalized gradient approximation, hybrid, semi-empirical, and Coulomb attenuating methods were utilized to compare theoretical electronic transitions and experimental absorption spectra at different pH. The main peaks and shoulders observed in experimental spectra were assigned to its correct conformer. In order to find the most populated conformer, thermal effects on stability calculations were investigated to obtain molar fractions of possible isomers present at room and higher temperature. Theoretical electronic transitions at distinct pH could be obtained varying the protonation a deprotonation degree. It was found that generalized gradient approximation performs very well the first transition peak at neutral pH. For higher pH, all methodologies got a bathochromic shift in agreement with experiment and finally, from these theoretical results, it was obtained that this azo dye is hardly protonated in experiments since results presented here, predict a variation of absorption spectra for all proposed methodologies when the molecule is protonated, which is different to experimental results. Graphical Abstract Calculated electronic transitions of azo and hydrazone tautomers in water implicit solvent (BLYP/6-311G(2d,p) methodology).

3.
J Phys Chem A ; 110(30): 9459-68, 2006 Aug 03.
Artigo em Inglês | MEDLINE | ID: mdl-16869697

RESUMO

We have performed both semiempirical as well as ab initio density functional theory calculations in order to investigate the structural stability of highly hydroxylated C60(OH)32 fullerenes, so-called fullerenols. Interestingly, we have found that low-energy atomic configurations are obtained when the OH groups are covering the C60 in the form of small hydroxyl islands. The previous formation of OH molecular domains on the carbon surface, stabilized by hydrogen bonds between neighboring OH groups, defines the existence of C60(OH)32 fullerene structures with some elongated C-C bonds, closed electronic shells, and large highest occupied-lowest unoccupied molecular orbital energy gaps, with the latter two being well-known indicators of high chemical stability in these kind of carbon compounds. The calculated optical absorption spectra show that the location of the first single dipole-allowed excitation strongly depends on the precise distribution of the OH groups on the surface, a result that, combined with optical spectroscopy experiments, might provide an efficient way to identify the structure of these kinds of fullerene derivatives. We found that the presence of a few coadsorbed oxygen species on the fullerene surface leads in general to the existence of C60(OH)32O(x) (x = 1-4) compounds in which some of the C-C bonds just below the O impurities are replaced by C-O-C bridge bonds, leading to the formation of stable carbon-opened structures in agreement with the recent experimental work of Xing et al. (J. Phys. Chem. B 2004, 108, 11473). Actually, a more dramatic cage destruction is obtained when considering multiply charged C60(OH)32O(x)(+/-m) (m = 2, 4, 6) species (that can exist in both gas-phase and aqueous environments), where now sizable holes made of 9- and 10-membered rings can exist in the carbon network. We believe that our results are important if the controlled opening of carbon cages is needed and it should be taken into account also in several technological applications where the permanent encapsulation of atomic or molecular species in these types of fullerene derivatives is required.

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